Package: DEPONS2R 1.2.4
DEPONS2R: Read, Plot and Analyse Output from the DEPONS Model
Methods for analyzing population dynamics and movement tracks simulated using the DEPONS model <https://www.depons.eu> (v.3.0), for manipulating input raster files, shipping routes and for analyzing sound propagated from ships.
Authors:
DEPONS2R_1.2.4.tar.gz
DEPONS2R_1.2.4.zip(r-4.5)DEPONS2R_1.2.4.zip(r-4.4)DEPONS2R_1.2.4.zip(r-4.3)
DEPONS2R_1.2.4.tgz(r-4.4-any)DEPONS2R_1.2.4.tgz(r-4.3-any)
DEPONS2R_1.2.4.tar.gz(r-4.5-noble)DEPONS2R_1.2.4.tar.gz(r-4.4-noble)
DEPONS2R_1.2.4.tgz(r-4.4-emscripten)DEPONS2R_1.2.4.tgz(r-4.3-emscripten)
DEPONS2R.pdf |DEPONS2R.html✨
DEPONS2R/json (API)
| # Install 'DEPONS2R' in R: |
| install.packages('DEPONS2R', repos = c('https://jacobnabe.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jacobnabe/depons2r/issues
- aisdata - Position for three ships in the inner Danish waters
- bathymetry - Bathymetry of the Kattegat area
- coastline - Coastline of Northern Europe
- porpoisebdyn - Simulated porpoise population dynamics
- porpoisedyn - Simulated porpoise population dynamics
- porpoisetrack - Simulated porpoise track
- shipdata - Hypothetical ships on routes through Kattegat
agent-based-modelingenvironmental-modellingmarine-biology
Last updated 2 days agofrom:8941d58225. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 21 2024 |
| R-4.5-win | OK | Nov 21 2024 |
| R-4.5-linux | OK | Nov 21 2024 |
| R-4.4-win | OK | Nov 21 2024 |
| R-4.4-mac | OK | Nov 21 2024 |
| R-4.3-win | OK | Nov 21 2024 |
| R-4.3-mac | OK | Nov 21 2024 |
Exports:ais.to.DeponsShipsas.data.framebboxcrscrs<-dynget.latest.simget.simtimeinterpolate.ais.datalandscapelandscape<-make.blocksrastermake.clip.polymake.DeponsDynmake.windfarmsplotread.DeponsBlockdynread.DeponsDynread.DeponsParamread.DeponsRasterread.DeponsShipsread.DeponsTrackroutesroutes<-shipsships<-startdaystartday<-summarytick.to.timetitletitle<-write
Dependencies:classclassIntcliDBIe1071jsonliteKernSmoothlatticemagrittrMASSproxyrasterRcpprlangs2sfspterraunitswkxml2
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Convert ship tracks to DeponsShips object | ais.to.DeponsShips |
| Position for three ships in the inner Danish waters | aisdata |
| Convert DeponsDyn object to data frame | as.data.frame,DeponsDyn-method |
| Convert DEPONS track to data frame | as.data.frame,DeponsTrack-method |
| Bathymetry of the Kattegat area | bathymetry |
| Get bbox from Depons* object | bbox bbox,DeponsRaster-method bbox,DeponsTrack-method |
| Coastline of Northern Europe | coastline |
| Get or set map projection in Depons* objects | crs crs,DeponsRaster-method crs,DeponsShips-method crs,DeponsTrack-method crs<- crs<-,DeponsRaster-method crs<-,DeponsShips-method crs<-,DeponsTrack-method |
| Package for analyzing DEPONS simulation output | DEPONS2R |
| DeponsBlockdyn-class | DeponsBlockdyn-class |
| DeponsDyn-class | DeponsDyn-class |
| DeponsRaster-class | DeponsRaster-class |
| DeponsShips-class | DeponsShips-class |
| DeponsTrack-class | DeponsTrack-class |
| Extract population dynamics from objects | dyn dyn,DeponsBlockdyn-method dyn,DeponsDyn-method |
| Get name of newest file | get.latest.sim |
| Get simulation date | get.simtime |
| Interpolate AIS data | interpolate.ais.data |
| Get or set the landscape name | landscape landscape,DeponsBlockdyn-method landscape,DeponsDyn-method landscape,DeponsTrack-method landscape<- landscape<-,DeponsBlockdyn-method landscape<-,DeponsDyn-method landscape<-,DeponsTrack-method |
| Makes new file with blocks | make.blocksraster make.blocksraster,DeponsRaster-method |
| Make clipping polygon from bbox | make.clip.poly make.clip.poly,matrix-method |
| Make DeponsDyn object from data stored in data frame | make.DeponsDyn |
| Make wind farm construction scenario | make.windfarms |
| Plot a DeponsBlockdyn object | plot,DeponsBlockdyn,missing-method plot.DeponsBlockdyn |
| Plot a DeponsDyn object | plot,DeponsDyn,missing-method plot.DeponsDyn |
| Plot a DeponsRaster object | plot,DeponsRaster,ANY-method plot,DeponsRaster,DeponsTrack-method plot.DeponsRaster |
| Plot a DeponsShips object | plot,DeponsShips,missing-method plot.DeponsShips |
| Plot a DeponsTrack object | plot,DeponsTrack,missing-method plot.DeponsTrack |
| Simulated porpoise population dynamics | porpoisebdyn |
| Simulated porpoise population dynamics | porpoisedyn |
| Simulated porpoise track | porpoisetrack |
| Reading simulated population count for blocks | read.DeponsBlockdyn |
| Reading DEPONS simulation output | read.DeponsDyn |
| Read simulation parameters | read.DeponsParam |
| Reading DEPONS raster files | read.DeponsRaster |
| Read DEPONS ship files | read.DeponsShips |
| Reading DEPONS track files | read.DeponsTrack |
| Get or define routes in DeponsShips objects | routes routes,DeponsShips-method routes<- routes<-,DeponsShips-method |
| Hypothetical ships on routes through Kattegat | shipdata |
| Get or define ships in DeponsShips objects | ships ships,DeponsShips-method ships<- ships<-,DeponsShips-method |
| Get or set start date for simulation | startday startday,DeponsBlockdyn-method startday,DeponsDyn-method startday<- startday<-,DeponsBlockdyn-method startday<-,DeponsDyn-method |
| Summary | summary summary,DeponsBlockdyn-method summary,DeponsDyn-method summary,DeponsRaster-method summary,DeponsShips-method summary,DeponsTrack-method Summary-methods |
| Convert tick number to date | tick.to.time |
| Get or set the title of Depons* objects | title title,DeponsDyn-method title,DeponsShips-method title,DeponsTrack-method title<- title<-,DeponsDyn-method title<-,DeponsShips-method title<-,DeponsTrack-method |
| Write DEPONS ship files | write,DeponsShips-method write.DeponsShips |
