Package: DEPONS2R 1.2.6

DEPONS2R: Read, Plot and Analyse Output from the DEPONS Model

Methods for analyzing population dynamics and movement tracks simulated using the DEPONS model <https://www.depons.eu> (v.3.0), for manipulating input raster files, shipping routes and for analyzing sound propagated from ships.

Authors:Jacob Nabe-Nielsen [aut, cre], Caitlin K. Frankish [aut], Axelle Cordier [aut], Florian G. Weller [aut]

DEPONS2R_1.2.6.tar.gz
DEPONS2R_1.2.6.zip(r-4.5)DEPONS2R_1.2.6.zip(r-4.4)DEPONS2R_1.2.6.zip(r-4.3)
DEPONS2R_1.2.6.tgz(r-4.4-any)DEPONS2R_1.2.6.tgz(r-4.3-any)
DEPONS2R_1.2.6.tar.gz(r-4.5-noble)DEPONS2R_1.2.6.tar.gz(r-4.4-noble)
DEPONS2R_1.2.6.tgz(r-4.4-emscripten)DEPONS2R_1.2.6.tgz(r-4.3-emscripten)
DEPONS2R.pdf |DEPONS2R.html✨
DEPONS2R/json (API)

# Install 'DEPONS2R' in R:
install.packages('DEPONS2R', repos = c('https://jacobnabe.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jacobnabe/depons2r/issues

Datasets:

On CRAN:

agent-based-modelingenvironmental-modellingmarine-biology

2.85 score 4 scripts 735 downloads 39 exports 28 dependencies

Last updated 26 days agofrom:c87a71267b. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 24 2025
R-4.5-winOKJan 24 2025
R-4.5-linuxOKJan 24 2025
R-4.4-winOKJan 24 2025
R-4.4-macOKJan 24 2025
R-4.3-winOKJan 24 2025
R-4.3-macOKJan 24 2025

Exports:ais.to.DeponsShipsas.data.framebboxcalib_01check.DeponsShipscrscrs<-dynget.latest.simget.simtimeinterpolate.ais.datalandscapelandscape<-make.blocksrastermake.clip.polymake.DeponsDynmake.stationary.shipsmake.windfarmsplotread.DeponsBlockdynread.DeponsDynread.DeponsDynBatchread.DeponsParamread.DeponsRasterread.DeponsShipsread.DeponsTrackread.DeponsTrackBatchroutesroutes<-shipsships<-startdaystartday<-summarytick.to.timetime.to.ticktitletitle<-write

Dependencies:ade4adehabitatLTadehabitatMAbootCircStatsclassclassIntcliDBIe1071jsonliteKernSmoothlatticemagrittrMASSpixmapproxyrasterRcppRcppArmadillorlangs2sfspterraunitswkxml2

Readme and manuals

Help Manual

Help pageTopics
Convert ship tracks to DeponsShips objectais.to.DeponsShips
Position for three ships in the inner Danish watersaisdata
Convert DeponsDyn object to data frameas.data.frame,DeponsDyn-method
Convert DeponsTrack to data frameas.data.frame,DeponsTrack-method
Bathymetry of the Kattegat areabathymetry
Get bbox from Depons* objectbbox bbox,DeponsRaster-method bbox,DeponsTrack-method
Plot distribution of turning angles, step lengths and speed of tracked simulated porpoises.calib_01
Check if ships move at unrealistic speeds or are outside the map boundarycheck.DeponsShips
Coastline of Northern Europecoastline
Get or set map projection in Depons* objectscrs crs,DeponsRaster-method crs,DeponsShips-method crs,DeponsTrack-method crs<- crs<-,DeponsRaster-method crs<-,DeponsShips-method crs<-,DeponsTrack-method
Package for analyzing DEPONS simulation outputDEPONS2R
DeponsBlockdyn-classDeponsBlockdyn-class
DeponsDyn-classDeponsDyn-class
DeponsRaster-classDeponsRaster-class
DeponsShips-classDeponsShips-class
DeponsTrack-classDeponsTrack-class
Extract population dynamics from objectsdyn dyn,DeponsBlockdyn-method dyn,DeponsDyn-method
Get name of newest fileget.latest.sim
Get simulation dateget.simtime
Interpolate AIS datainterpolate.ais.data
Get or set the landscape namelandscape landscape,DeponsBlockdyn-method landscape,DeponsDyn-method landscape,DeponsTrack-method landscape<- landscape<-,DeponsBlockdyn-method landscape<-,DeponsDyn-method landscape<-,DeponsTrack-method
Makes new file with blocksmake.blocksraster make.blocksraster,DeponsRaster-method
Make clipping polygon from bboxmake.clip.poly make.clip.poly,matrix-method
Make DeponsDyn object from data stored in data framemake.DeponsDyn
Identify and parameterize stationary active ships in a DeponsShips objectmake.stationary.ships
Make wind farm construction scenariomake.windfarms
Plot a DeponsBlockdyn objectplot,DeponsBlockdyn,missing-method plot.DeponsBlockdyn
Plot a DeponsDyn objectplot,DeponsDyn,missing-method plot.DeponsDyn
Plot a DeponsRaster objectplot,DeponsRaster,ANY-method plot,DeponsRaster,DeponsTrack-method plot.DeponsRaster
Plot a DeponsShips objectplot,DeponsShips,missing-method plot.DeponsShips
Plot a DeponsTrack objectplot,DeponsTrack,missing-method plot.DeponsTrack
Simulated porpoise population dynamicsporpoisebdyn
Simulated porpoise population dynamicsporpoisedyn
Simulated porpoise trackporpoisetrack
Reading simulated population count for blocksread.DeponsBlockdyn
Reading DEPONS simulation outputread.DeponsDyn
Read and merges DEPONS Batchmap and Statistics Filesread.DeponsDynBatch
Read simulation parametersread.DeponsParam
Reading DEPONS raster filesread.DeponsRaster
Read DEPONS ship filesread.DeponsShips
Reading DEPONS track filesread.DeponsTrack
Read and Process DEPONS Batchmap and Statistics Filesread.DeponsTrackBatch
Get or define routes in DeponsShips objectsroutes routes,DeponsShips-method routes<- routes<-,DeponsShips-method
Ships on example routes through the Kattegatshipdata
Get or define ships in DeponsShips objectsships ships,DeponsShips-method ships<- ships<-,DeponsShips-method
Get or set start date for simulationstartday startday,DeponsBlockdyn-method startday,DeponsDyn-method startday<- startday<-,DeponsBlockdyn-method startday<-,DeponsDyn-method
Summarysummary summary,DeponsBlockdyn-method summary,DeponsDyn-method summary,DeponsRaster-method summary,DeponsShips-method summary,DeponsTrack-method Summary-methods
Convert tick number to time objecttick.to.time
Convert date to tick numbertime.to.tick
Get or set the title of Depons* objectstitle title,DeponsDyn-method title,DeponsShips-method title,DeponsTrack-method title<- title<-,DeponsDyn-method title<-,DeponsShips-method title<-,DeponsTrack-method
Write DEPONS ship fileswrite,DeponsShips-method write.DeponsShips