Package: DEPONS2R 1.2.6
DEPONS2R: Read, Plot and Analyse Output from the DEPONS Model
Methods for analyzing population dynamics and movement tracks simulated using the DEPONS model <https://www.depons.eu> (v.3.0), for manipulating input raster files, shipping routes and for analyzing sound propagated from ships.
Authors:
DEPONS2R_1.2.6.tar.gz
DEPONS2R_1.2.6.zip(r-4.5)DEPONS2R_1.2.6.zip(r-4.4)DEPONS2R_1.2.6.zip(r-4.3)
DEPONS2R_1.2.6.tgz(r-4.4-any)DEPONS2R_1.2.6.tgz(r-4.3-any)
DEPONS2R_1.2.6.tar.gz(r-4.5-noble)DEPONS2R_1.2.6.tar.gz(r-4.4-noble)
DEPONS2R_1.2.6.tgz(r-4.4-emscripten)DEPONS2R_1.2.6.tgz(r-4.3-emscripten)
DEPONS2R.pdf |DEPONS2R.html✨
DEPONS2R/json (API)
# Install 'DEPONS2R' in R: |
install.packages('DEPONS2R', repos = c('https://jacobnabe.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jacobnabe/depons2r/issues
- aisdata - Position for three ships in the inner Danish waters
- bathymetry - Bathymetry of the Kattegat area
- coastline - Coastline of Northern Europe
- porpoisebdyn - Simulated porpoise population dynamics
- porpoisedyn - Simulated porpoise population dynamics
- porpoisetrack - Simulated porpoise track
- shipdata - Ships on example routes through the Kattegat
agent-based-modelingenvironmental-modellingmarine-biology
Last updated 26 days agofrom:c87a71267b. Checks:7 OK. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Jan 24 2025 |
R-4.5-win | OK | Jan 24 2025 |
R-4.5-linux | OK | Jan 24 2025 |
R-4.4-win | OK | Jan 24 2025 |
R-4.4-mac | OK | Jan 24 2025 |
R-4.3-win | OK | Jan 24 2025 |
R-4.3-mac | OK | Jan 24 2025 |
Exports:ais.to.DeponsShipsas.data.framebboxcalib_01check.DeponsShipscrscrs<-dynget.latest.simget.simtimeinterpolate.ais.datalandscapelandscape<-make.blocksrastermake.clip.polymake.DeponsDynmake.stationary.shipsmake.windfarmsplotread.DeponsBlockdynread.DeponsDynread.DeponsDynBatchread.DeponsParamread.DeponsRasterread.DeponsShipsread.DeponsTrackread.DeponsTrackBatchroutesroutes<-shipsships<-startdaystartday<-summarytick.to.timetime.to.ticktitletitle<-write
Dependencies:ade4adehabitatLTadehabitatMAbootCircStatsclassclassIntcliDBIe1071jsonliteKernSmoothlatticemagrittrMASSpixmapproxyrasterRcppRcppArmadillorlangs2sfspterraunitswkxml2
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Convert ship tracks to DeponsShips object | ais.to.DeponsShips |
Position for three ships in the inner Danish waters | aisdata |
Convert DeponsDyn object to data frame | as.data.frame,DeponsDyn-method |
Convert DeponsTrack to data frame | as.data.frame,DeponsTrack-method |
Bathymetry of the Kattegat area | bathymetry |
Get bbox from Depons* object | bbox bbox,DeponsRaster-method bbox,DeponsTrack-method |
Plot distribution of turning angles, step lengths and speed of tracked simulated porpoises. | calib_01 |
Check if ships move at unrealistic speeds or are outside the map boundary | check.DeponsShips |
Coastline of Northern Europe | coastline |
Get or set map projection in Depons* objects | crs crs,DeponsRaster-method crs,DeponsShips-method crs,DeponsTrack-method crs<- crs<-,DeponsRaster-method crs<-,DeponsShips-method crs<-,DeponsTrack-method |
Package for analyzing DEPONS simulation output | DEPONS2R |
DeponsBlockdyn-class | DeponsBlockdyn-class |
DeponsDyn-class | DeponsDyn-class |
DeponsRaster-class | DeponsRaster-class |
DeponsShips-class | DeponsShips-class |
DeponsTrack-class | DeponsTrack-class |
Extract population dynamics from objects | dyn dyn,DeponsBlockdyn-method dyn,DeponsDyn-method |
Get name of newest file | get.latest.sim |
Get simulation date | get.simtime |
Interpolate AIS data | interpolate.ais.data |
Get or set the landscape name | landscape landscape,DeponsBlockdyn-method landscape,DeponsDyn-method landscape,DeponsTrack-method landscape<- landscape<-,DeponsBlockdyn-method landscape<-,DeponsDyn-method landscape<-,DeponsTrack-method |
Makes new file with blocks | make.blocksraster make.blocksraster,DeponsRaster-method |
Make clipping polygon from bbox | make.clip.poly make.clip.poly,matrix-method |
Make DeponsDyn object from data stored in data frame | make.DeponsDyn |
Identify and parameterize stationary active ships in a DeponsShips object | make.stationary.ships |
Make wind farm construction scenario | make.windfarms |
Plot a DeponsBlockdyn object | plot,DeponsBlockdyn,missing-method plot.DeponsBlockdyn |
Plot a DeponsDyn object | plot,DeponsDyn,missing-method plot.DeponsDyn |
Plot a DeponsRaster object | plot,DeponsRaster,ANY-method plot,DeponsRaster,DeponsTrack-method plot.DeponsRaster |
Plot a DeponsShips object | plot,DeponsShips,missing-method plot.DeponsShips |
Plot a DeponsTrack object | plot,DeponsTrack,missing-method plot.DeponsTrack |
Simulated porpoise population dynamics | porpoisebdyn |
Simulated porpoise population dynamics | porpoisedyn |
Simulated porpoise track | porpoisetrack |
Reading simulated population count for blocks | read.DeponsBlockdyn |
Reading DEPONS simulation output | read.DeponsDyn |
Read and merges DEPONS Batchmap and Statistics Files | read.DeponsDynBatch |
Read simulation parameters | read.DeponsParam |
Reading DEPONS raster files | read.DeponsRaster |
Read DEPONS ship files | read.DeponsShips |
Reading DEPONS track files | read.DeponsTrack |
Read and Process DEPONS Batchmap and Statistics Files | read.DeponsTrackBatch |
Get or define routes in DeponsShips objects | routes routes,DeponsShips-method routes<- routes<-,DeponsShips-method |
Ships on example routes through the Kattegat | shipdata |
Get or define ships in DeponsShips objects | ships ships,DeponsShips-method ships<- ships<-,DeponsShips-method |
Get or set start date for simulation | startday startday,DeponsBlockdyn-method startday,DeponsDyn-method startday<- startday<-,DeponsBlockdyn-method startday<-,DeponsDyn-method |
Summary | summary summary,DeponsBlockdyn-method summary,DeponsDyn-method summary,DeponsRaster-method summary,DeponsShips-method summary,DeponsTrack-method Summary-methods |
Convert tick number to time object | tick.to.time |
Convert date to tick number | time.to.tick |
Get or set the title of Depons* objects | title title,DeponsDyn-method title,DeponsShips-method title,DeponsTrack-method title<- title<-,DeponsDyn-method title<-,DeponsShips-method title<-,DeponsTrack-method |
Write DEPONS ship files | write,DeponsShips-method write.DeponsShips |